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egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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Installation issues #48

Closed zinagood closed 4 years ago

zinagood commented 4 years ago

Describe the bug Dear Ege and Ozan, I tried a few ways to install pathfindR on my Mac running R 3.6.1 and macOS Catalina 10.15.4. I attempted to use CRAN, pak, or GitHub, or source install, as described on your website. However, this failed each time. Could you please update your package, so it's compatible with R 3.6? If possible, it would be great if you could include macOS binary into your CRAN repository. I used earlier version of your software around a year ago and really liked the way you implemented it. It would be wonderful to keep using it. Thanks! Zina

To Reproduce Steps to reproduce the behavior:

  1. install.packages("pathfindR")
  2. pak::pkg_install("egeulgen/pathfindR")
  3. install.packages("pathfindR_1.5.0.tar.gz", repos = NULL, type = "source") (for #3) ERROR: this R is version 3.6.1, package 'pathfindR' requires R >= 4.0

Expected behavior Package installed successfully.

Desktop (please complete the following information):

R Session Information: R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.4

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] rstudioapi_0.11 xml2_1.3.2 magrittr_1.5 hms_0.5.3 progress_1.2.2
[6] rappdirs_0.3.1 uuid_0.1-4 R6_2.4.1 rlang_0.4.6 cliapp_0.1.0
[11] fansi_0.4.1 stringr_1.4.0 tools_3.6.1 pak_0.1.2 pkgcache_1.0.7
[16] cli_2.0.2 withr_2.2.0 selectr_0.4-2 ellipsis_0.3.0 assertthat_0.2.1 [21] digest_0.6.25 tibble_3.0.1 lifecycle_0.2.0 crayon_1.3.4 processx_3.4.2
[26] callr_3.4.3 vctrs_0.3.0 ps_1.3.2 curl_4.3 glue_1.4.0
[31] stringi_1.4.6 compiler_3.6.1 pillar_1.4.3 filelock_1.0.2 prettyunits_1.1.1 [36] pkgconfig_2.0.3

egeulgen commented 4 years ago

dear @zinagood,

As the error states 'pathfindR' requires R >= 4.0. Please update R to 4.0