search

egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
Other
178 stars 25 forks source link

Mouse database #80

Closed pekjoonwu closed 3 years ago

pekjoonwu commented 3 years ago

Hey,

Thanks for developing this wonderful tool! I am wondering if you guys would update the package with Mouse terms and pathways?

Thanks.

egeulgen commented 3 years ago

Hey, Thanks for your kind appraisal. The mouse-related data are already in the package and can be used follows:

mmu_output <- run_pathfindR(input = myeloma_input,
                            convert2alias = FALSE,
                            gene_sets = "mmu_KEGG",
                            pin_name_path = "mmu_STRING")

For other organisms, see this related vignette