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egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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R session aborted, R encountered a fatal error #88

Closed caonetto closed 3 years ago

caonetto commented 3 years ago

Hi, first of all thanks for creating this package! I am encountering a fatal error everytime I try to run pathfindR with the plot_enrichment_chart = TRUE option. I am using my own custom gene set (Saccharomyces cerevisiae) and it all runs smoothly as long as I dont try to plot the enrichment charts. I am not seeing any errors in the console prior to R freezing completely which forces me to terminate the session. Any ideas what could be going on??

Thanks

egeulgen commented 3 years ago

hey, Thanks, glad you enjoy the package. This might be related to an issue with ggplot2 or maybe an R issue in general (see https://github.com/rstudio/rstudio/issues/9373, maybe try fixes suggested there?)

Could you share your sessionInfo()?

caonetto commented 3 years ago

Thanks, fixed with the update of Rstudio!