filtering the input genelist

egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

https://egeulgen.github.io/pathfindR/

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filtering the input genelist #89

Closed nfancy closed 3 years ago

nfancy commented 3 years ago

Hi,

Thank you for this great package. I was wondering if it is possible to input a filtered genelist by logFC? I can see from the vignette that the run_pathfindR unction will subset based on p-value but can I further filter based on logFC?

BW Nurun

egeulgen commented 3 years ago

Hello, pathfindR does not have an option to subset based on LFC, you may use the base function subset() instead. Best, -E