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eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment
http://eggnog-mapper.embl.de
GNU Affero General Public License v3.0
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Where is one2one or many2many mapping in annotation result? #109

Closed olgabot closed 3 years ago

olgabot commented 6 years ago

Hello, Thank you so much for creating this great tool! We're using it for annotating ticks. I first heard about the tool from Detlev Arendt who showed how they obtained human gene annotations on their sponge genes, including one2one and one2many orthology mapping. I was excited to run eggNOG our transcriptome data (PacBio Iso-Seq full transcripts) and I used the default settings on the web tool to get some very interesting results, however, I did not see a column in the data that indicated the type of orthology mapping for the gene. Am I missing something? Thank you! Warmest, Olga

Cantalapiedra commented 4 years ago

Dear Olga,

sorry for the delay answering. We will try to add this information in the next version if possible. Currently, you can ask eggnog-mapper to return only one2one, one2many, results and so on, but the relationship is not included in the output.

Cantalapiedra commented 3 years ago

This information can be obtained currently using --report_orthologs