Closed EulleSA closed 3 years ago
Hi @EulleSA ,
You need the taxa database.
Regarding the diamond database, if your sequences are not eggnog proteins, or you don't have hits to eggnog proteins, you need to perform a search step, either with diamonds, mmseqs2 or hmmer. Diamond is the default, and that is why it is downloaded by default also.
I hope this makes sense.
Best, Carlos
I got it! Thank you very much, Catalapiedra!
@Cantalapiedra Could you tell me if you can define by command line to download all the necessary banks, without having to choose "y" and "n"?
Hi @EulleSA ,
check download_eggnog_data.py --help
. You should be able to do it with -D, -M, -H -d, -f, ...
Best, Carlos
Thank you very much!
Hi, everybody!
I noticed that the "download_eggnog_data.py" script downloads 3 databases( annotation, taxa, and diamond).
Bearing in mind that I only want to perform the functional annotation to get the KO identifier of each annotated sequence, is it necessary to download all the databases?
Thanks in advance!