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eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment
http://eggnog-mapper.embl.de
GNU Affero General Public License v3.0
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COG_category X #438

Closed rotheconrad closed 1 year ago

rotheconrad commented 1 year ago

Hello,

NCBI has listed a COG category of [X] Mobilome: prophages, transposons. But I do not find a sing X assigned by eggnog mapper in several genomes from several different species that I know have mobile genes.

Additionally, I didn't get any results for [Y] Nuclear structure, [W] Extracellular structures, or [R] General function prediction. These are results for 10+ closed genomes from 100+ species. I don't find a discussion in the documentation about COG category assignments and decisions.

I installed Eggnog-mapper and downloaded the database just last week. Does the current eggnog database not contain the X category? Are there plans to? It was very convenient and smooth to annotate my genes with your tool but I need the X category.

Thanks, Roth

Cantalapiedra commented 1 year ago

Hi @rotheconrad ,

There are no X in the eggNOG 5.0 database I have. Sorry for the inconveniences.

Carlos

Cantalapiedra commented 1 year ago

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