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eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment
http://eggnog-mapper.embl.de
GNU Affero General Public License v3.0
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Is it possible to increase the # of sequences/bp limit on the web? #461

Open davecarlon opened 1 year ago

davecarlon commented 1 year ago

I ran a few small projects via the web, and was really impressed by the speed of eggnog-mapper compared to using aBLASTx step. I am doing a first pass on annotating two de novo transcriptomes, one is 17,000 transcripts, N50 around 1000; and the second is smaller about 800 transcripts, and similar N50. While the smaller could run on the web via 1 or 2 submissions, running the larger transcriptome is not feasible with the current sequence/bp limit. Is there any way to run larger projects on the web?

Thanks, Dave

Cantalapiedra commented 1 year ago

Hi @davecarlon ,

In what sense it is not feasible running your transcriptomes? What kind of analysis are you trying to run and what is the error message that you get? I am asking because the limit for proteins and for CDS is 100,000 input sequences, if I am not mistaken. Maybe there is some bug around...

Best, Carlos