Which version of pfam, kegg, cazy etc is used?

eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

http://eggnog-mapper.embl.de

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Which version of pfam, kegg, cazy etc is used? #487

Open yeastbeast opened 10 months ago

yeastbeast commented 10 months ago

I am trying to retrieve metadata for Pfam and KEGG annotation terms but it seems the eggNOG mapper is not using the latest version of those databases and there is therefore a number of discrepancies (terms which have been removed). How can I find out which release of the external databases are used?

Cantalapiedra commented 9 months ago

Hi,

This is a recurrent question (for instance https://github.com/eggnogdb/eggnog-mapper/issues/268).

Unfortunately, I don't know which databases were used to annotate eggnog5. My only guess is that they are versions close to the date of publication of the database.

Best, Carlos