Problem running emapper.py and download bact arch viruses

eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

http://eggnog-mapper.embl.de

GNU Affero General Public License v3.0

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Problem running emapper.py and download bact arch viruses #489

Open xjhzjucas opened 10 months ago

xjhzjucas commented 10 months ago

Dear authors: I encountered a problem running emapper.py when I used command as follow: emapper.py -i abc.fa -o k -m diamond --cpu 64 --dmnd_db /db/eggnog/ it turns out :Database bact not present. Use "hmmpress" to create the .h3* files how can I get the bact db? I install the database using command：download_eggnog_data.py -y -f --data_dir db/eggnog

thank you very much !

Cantalapiedra commented 10 months ago

Hi @xjhzjucas ,

First of all, what kind of search are you trying to do? Do you wish to use diamond or hmmer? Do you need the CLI version or would be the web version useful for you also? How did you install eggnog-mapper? Which version is it?

Best, Carlos