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eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment
http://eggnog-mapper.embl.de
GNU Affero General Public License v3.0
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Mapping eggnog with other annotations #503

Closed matthpich closed 4 months ago

matthpich commented 4 months ago

Hi, Not an issue but Is the mapping between eggnogs and other annotations available somewhere? Many thanks!

matthpich commented 4 months ago

Found it in data/eggnog.db:

SELECT pname, gos, kegg_ec, kegg_ko, kegg_pathway, kegg_module, kegg_reaction, kegg_rclass, kegg_brite, kegg_tc, kegg_cazy, bigg_reaction, pfam FROM prots

Cantalapiedra commented 4 months ago

Dear @matthpich ,

Glad that you found what you were looking for. Note that most of this information should be also available at http://eggnog5.embl.de/#/app/downloads

Best, Carlos