Question: How to generate .faa with Eggnog?

eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

http://eggnog-mapper.embl.de

GNU Affero General Public License v3.0

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Question: How to generate .faa with Eggnog? #508

Open cmkobel opened 2 months ago

cmkobel commented 2 months ago

Hello. I'm using Eggnog to annotate MAGs (metagenome assembled genomes). I'm very excited about the output annotations, but I need the .faa (fasta amino acid) output. Is there a straight forward way of generating this? How do you recommend that I translate my eggnog-called genes to .faa?

Cantalapiedra commented 2 months ago

Dear @cmkobel ,

How are you running eggnog-mapper? Can you provide a list of the output files you get?

Best, Carlos