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eggnogdb / eggnog-mapper

Fast genome-wide functional annotation through orthology assignment
http://eggnog-mapper.embl.de
GNU Affero General Public License v3.0
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diamond: cannot execute binary file #510

Open jcarlospana15 opened 6 months ago

jcarlospana15 commented 6 months ago

emapper.py -i /Users/juan/eggnog-mapper/Xylaria_sp_Z50_mai6.scaffolds.fsa --output p53_maNOG -m diamond

/Users/juan/eggnog-mapper/eggnogmapper/bin/diamond blastp -d '/Users/juan/eggnog-mapper/data/eggnog_proteins.dmnd' -q '/Users/juan/eggnog-mapper/Xylaria_sp_Z50_mai6.scaffolds.fsa' --threads 1 -o '/Users/juan/eggnog-mapper/p53_maNOG.emapper.hits' --tmpdir '/Users/juan/eggnog-mapper/emappertmp_dmdn_72pb5cqo' --sensitive --iterate -e 0.001 --top 3 --outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore qcovhsp scovhsp Error running diamond: /bin/sh: /Users/juan/eggnog-mapper/eggnogmapper/bin/diamond: cannot execute binary file

Cantalapiedra commented 6 months ago

Hi @jcarlospana15 ,

Could you give me some more details about your issue? What is your hardward and SO? How did you install eggnog-mapper? Is diamond installed somehow? Which version? What is your input data? What is the command you are trying to run?

Best, Carlos