Compiling DNest3 on MacBook pro 10.9.1

[suvenduat]

Hello,

I am very interested to try DNest3. I installed it in my Macbook pro OSX 10.9. It has successfully installed but I can not compile it. After typing "make" in home directory, I got the following errors: ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status make: *\ [shared] Error 1

Could you please tell me what should I do to compile it? Thank you very much.

[eggplantbren]

Hello. Is this the only output of 'make'? I'm wondering which library cannot be found. Do you have all the dependencies installed?

[suvenduat]

Thanks. No, I just wrote the error that I got. I tried in two different MacBook Pro but both have osx 10.9.1 Here is the detail of the make:

---

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/CommandLineOptions.o -c src/CommandLineOptions.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/Level.o -c src/Level.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/LikelihoodType.o -c src/LikelihoodType.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/Model.o -c src/Model.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/Options.o -c src/Options.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/RandomNumberGenerator.o -c src/RandomNumberGenerator.cpp

g++ -fPIC -O2 -Wall -Wextra -ansi -pedantic -DNDEBUG -Wno-unused-parameter -Iinclude -o src/Utils.o -c src/Utils.cpp

mkdir -p lib

g++ -shared -o lib/libdnest3.so src/CommandLineOptions.o src/Level.o src/LikelihoodType.o src/Model.o src/Options.o src/RandomNumberGenerator.o src/Utils.o

Undefined symbols for architecture x86_64:

"boost::detail::get_tss_data(void const*)", referenced from:

  DNest3::RandomNumberGenerator::initialise_instance()      in

RandomNumberGenerator.o

  DNest3::randomU()     in RandomNumberGenerator.o

  DNest3::randn()     in RandomNumberGenerator.o

  DNest3::randInt(int)  in RandomNumberGenerator.o

"boost::detail::set_tssdata(void const, boost::shared_ptrboost::detail::tss_cleanupfunction, void, bool)", referenced from:

  DNest3::RandomNumberGenerator::initialise_instance()      in

RandomNumberGenerator.o

boost::thread_specific_ptrDNest3::RandomNumberGenerator::~thread_specific_ptr() in RandomNumberGenerator.o

"_gsl_ran_gaussian", referenced from:

  DNest3::RandomNumberGenerator::randn() const in

RandomNumberGenerator.o

  DNest3::randn()     in RandomNumberGenerator.o

"_gsl_rng_alloc", referenced from:

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

"_gsl_rng_free", referenced from:

  DNest3::RandomNumberGenerator::~RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::~RandomNumberGenerator() in

RandomNumberGenerator.o

boost::thread_specific_ptrDNest3::RandomNumberGenerator::delete_data::operator()(void*) in RandomNumberGenerator.o

"_gsl_rng_mt19937", referenced from:

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

"_gsl_rng_set", referenced from:

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator() in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::set_seed(int)  in

RandomNumberGenerator.o

"_gsl_rng_taus", referenced from:

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::RandomNumberGenerator(unsigned long)

in RandomNumberGenerator.o

"_gsl_rng_uniform_pos", referenced from:

  DNest3::RandomNumberGenerator::randomU() const in

RandomNumberGenerator.o

  DNest3::RandomNumberGenerator::randInt(int) const in

RandomNumberGenerator.o

  DNest3::randomU()     in RandomNumberGenerator.o

ld: symbol(s) not found for architecture x86_64

collect2: error: ld returned 1 exit status

make: *\ [shared] Error 1

---

On Sun, Feb 23, 2014 at 5:46 AM, Brendon J. Brewer <notifications@github.com

wrote:

Hello. Is this the only output of 'make'? I'm wondering which library cannot be found. Do you have all the dependencies installed?

Reply to this email directly or view it on GitHubhttps://github.com/eggplantbren/DNest3/issues/9#issuecomment-35819671 .

[eggplantbren]

Do you have boost_system, boost_thread, and gsl installed?

[suvenduat]

Yes. If you see the output, it is written boost, gsl...

On Sun, Feb 23, 2014 at 5:58 AM, Brendon J. Brewer <notifications@github.com

wrote:

Do you have boost_system, boost_thread, and gsl installed?

Reply to this email directly or view it on GitHubhttps://github.com/eggplantbren/DNest3/issues/9#issuecomment-35819892 .

[eggplantbren]

It looks like it is finding the libraries but not some of the functions in them. I don't know why, sorry. What versions of the libraries do you have?