search

eggzilla / RNAlien

RNAlien - unsupervised RNA family model construction
http://rna.tbi.univie.ac.at/rnalien/
GNU General Public License v3.0
14 stars 2 forks source link

Different Results for RNAlien between Server and Standalone Version #12

Closed riasc closed 4 months ago

riasc commented 7 years ago

Hello Florian, unfortunately, I have to bug you once again... I applied RNAlien on the following Sequence:

>1
AGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT

When I now look at the results from standalone version of RNAlien I get only this sequence. This is the result from the result.fa.

>1
AGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATT
TCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP006048.1:1588083-1588183 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921, complete genome
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT

However when I execute it on the server. I get much more results. Why is that? I mean the results would make sense if its only the result from the first iteration which indeed is only Salmonella.

The result from the server (http://nibiru.tbi.univie.ac.at/rnalien/result?sessionId=cm11049)

Thanks 

>1
AGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATT
TCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP006048.1:1588083-1588183 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921, complete genome
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP000880.1:1045534-1045634 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genomecmS_1_101_'+'
AAGGCGACGTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP006608.1:c1958594-1958494 Salmonella bongori N268-08, complete genomecmS_1_101_'+'
AGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP008905.1:c2721291-2721190 Enterobacter cloacae ECR091, complete genomecmS_2_102_'+'
AAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP000800.1:c2050802-2050701 Escherichia coli E24377A, complete genomecmS_2_102_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTT
>CP018810.1:4209259-4209360 Citrobacter freundii strain BD genomecmS_2_102_'+'
AGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP002272.1:2061584-2061685 Enterobacter lignolyticus SCF1, complete genomecmS_2_102_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>LT799040.1:3587644-3587745 Kosakonia oryzae strain D4 genome assembly, chromosome: IcmS_2_102_'+'
CAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP009450.1:3088163-3088264 Pluralibacter gergoviae strain FB2, complete genomecmS_2_102_'+'
AAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGACTCGTATTCGGTCTCTTTTT
>CP012264.1:c2528731-2528630 Cronobacter condimenti 1330 strain LMG 26250, complete genomecmS_2_102_'+'
AAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP007215.3:1977818-1977919 Enterobacter sacchari SP1, complete genomecmS_2_102_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTTTTTTT
>CP004887.1:2908622-2908723 Klebsiella michiganensis HKOPL1, complete genomecmS_2_102_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTT
>CP007025.1:4384346-4384447 Escherichia albertii KF1, complete genomecmS_2_102_'+'
AAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAAAACAGGAATCGTTTTCGGTCTCTTTTT
>CP017180.1:2708297-2708398 Enterobacter hormaechei subsp. oharae strain DSM 16687, complete genomecmS_2_102_'+'
AGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP006736.1:c1029973-1029872 Shigella dysenteriae 1617, complete genomecmS_2_102_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP011602.1:c2559606-2559505 Kluyvera intermedia strain CAV1151, complete genomecmS_2_102_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP001560.1:c1795635-1795534 Shimwellia blattae DSM 4481 = NBRC 105725, complete genomecmS_2_102_'+'
AGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP010238.1:c4592781-4592680 Escherichia coli strain S50, complete genomecmS_2_102_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP001790.1:2315391-2315491 Pectobacterium wasabiae WPP163, complete genomecmS_2_101_'+'
AAGGCTATTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP006664.1:c3666245-3666146 Edwardsiella tarda 080813, complete genomecmS_1_100_'+'
AAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGCCAGGTCTTTTTTT
>CP016889.1:c3968610-3968512 Pantoea agglomerans strain C410P1, complete genomecmS_2_99_'+'
AAGGCGACATCGCCTTCATAAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTC
CCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>LT596221.1:c2617251-2617149 Yersinia pseudotuberculosis isolate NZYP4713 genome assembly, chromosome: 1cmS_2_103_'+'
CGGCTGAATAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTAGACCGAATATCAGGAATCGTATTCGGTCTTTTTTT
>CP004141.1:1694050-1694149 Edwardsiella piscicida C07-087, complete genomecmS_1_100_'+'
AAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGTTAGGTCTTTTTTT
>CP015137.1:c4453614-4453513 Dickeya solani IPO 2222, complete genomecmS_1_102_'+'
GTTGTGATGCAGCCCGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTTT
>CP002206.1:c1728657-1728559 Pantoea vagans C9-1, complete genomecmS_2_99_'+'
AAGGCGACACCGCCTTCATAAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTC
CCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>HG326223.1:1278774-1278876 Serratia marcescens subsp. marcescens Db11, complete genomecmS_1_103_'+'
CGGCTGAACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCC
ATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>CP006929.1:c2041782-2041681 Dickeya zeae EC1, complete genomecmS_1_102_'+'
GTTGTGATGCAACTTGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTTT
>CP002038.1:c2301149-2301048 Dickeya dadantii 3937, complete genomecmS_3_102_'+'
TGCGATGCAGTCCGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATT
TCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTTT
>FP236843.1:c2798090-2797990 Erwinia billingiae strain Eb661 complete chromosomecmS_2_101_'+'
AAGGCGACATAGCCTGCATAAATGCCAACTTTTAGCGCACGGCTCCCACAAGGAGCCATT
TCCCTGGACCGAAGATAGGAATCGTCTTCGGTCTTTTTTT
>CP004345.1:2178253-2178350 Morganella morganii subsp. morganii KT, complete genomecmS_4_98_'+'
AGGTTGTACGATATTTTCAATGGCAATTTTAGCGCACGGCTCGCTATGAGCCTTTTTCCC
TGGACCGGATAGAGGACTTTATCCGGTCTCTTTTT
>CP002246.1:c2731641-2731540 Yersinia enterocolitica subsp. palearctica 105.5R(r), complete genomecmS_1_102_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>AM286415.1:1991570-1991671 Yersinia enterocolitica subsp. enterocolitica 8081 complete genomecmS_1_102_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCTTTTT
>FR904232.1:125298-125397 Serratia symbiotica SCt-VLC genomic scaffold 03cmS_6_100_'+'
GATAAATTATGCACTAAACGCCAACTTTTAGCGCATGGCTCTCCTAGGAGCCATTTCCCT
AGACCGAATATAGGAATCGTATTCGGTATTTTTTT
>CP015613.1:2066733-2066834 Serratia plymuthica PRI-2C, complete genomecmS_9_102_'+'
AAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTA
GACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>CP014608.1:c3347099-3346998 Obesumbacterium proteus strain DSM 2777, complete genomecmS_1_102_'+'
AAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTACCCTAGACCTGATACAGGAATCGTATCAGGTCTCTTTTT
>FN392235.1:1802196-1802295 Erwinia pyrifoliae DSM 12163 complete genome, culture collection DSM:12163cmS_3_100_'+'
AGGCCACAACGGCTGCAAGAACACCCACTTTTAGCGCACGGCTCTGTCAAGAGCCATTAC
CTTGGACTGAAGACAGGATTTGTCTTCAGTCTTTTTTT
>CP001600.2:c1730896-1730796 Edwardsiella ictaluri 93-146, complete genomecmS_1_101_'+'
AAGGCACTCAATGCTTGCATAATGCCAATTTTTAGCGCACGGCTCGACAATAAGAGCCCT
TCCCATAGACCTGACACAGGAATCGTGACGGGTCTTTTTTT
>CP017581.1:c3065890-3065793 Pantoea stewartii subsp. stewartii DC283, complete genomecmS_2_98_'+'
AAGGCGAAAGCCTGAACGAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCCTTTCCC
TGGACCGAATACCTGGAATAGTGTTCGGTCTTTTTTT
>LN854557.1:2137257-2137357 Sodalis glossinidius str. 'morsitans' isolate B4 genome assembly, chromosome: SgGMMB4_chromosomecmS_1_101_'+'
AGGACATCAAAAGCCTACAAAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAGAGCCAT
TTCCCTGGACAGAATATAGGAATCGTATTCGATTTTTTTAT
>CP015750.1:3931247-3931347 Pectobacterium wasabiae CFBP 3304, complete genomecmS_2_101_'+'
AAGGCTATTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACTGAATACAGGAATCGTATTCAGTCTTTTTTT
>CP002433.1:c2487497-2487399 Pantoea sp. At-9b, complete genomecmS_2_99_'+'
AAGGCGACCTCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCAAAGAGCCATTTC
CCTGGACCGGATACAGGAATCGTATTCGGTCTTTTTTT
>HF571988.1:2132996-2133097 Yersinia enterocolitica (type O:5) YE53/03 complete genomecmS_1_102_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTATTTTT
>CP009364.1:c1590741-1590640 Yersinia frederiksenii Y225, complete genomecmS_1_102_'+'
ATGGCTGAGTAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>BX950851.1:c2786788-2786689 Erwinia carotovora subsp. atroseptica SCRI1043, complete genomecmS_1_100_'+'
AGGGCTAGTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACTGAATACAGGAATCGTATTCAGTCTTTTTTT
>CP000826.1:2129609-2129710 Serratia proteamaculans 568, complete genomecmS_8_102_'+'
CAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCT
AGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>FN545154.1:c19315-19219 Arsenophonus nasoniae whole genome shotgun assembly, contig scaffold00140cmS_2_97_'+'
ATAGCATTTTGTTACGTCTCTATGACACATTTTAGCGCACGGCTCTCTAGAGCCATTTCC
CAAGACCGAGTATTGGAATTAGCTCGGTCTCTTTTT
>CP002154.1:1692512-1692611 Edwardsiella tarda FL6-60, complete genomecmS_1_100_'+'
AAGGCACTCAATGCCTGCATAATACCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGTTAGGTCTTTTTTT
>CP011359.1:c1714396-1714296 Edwardsiella tarda strain FL95-01, complete genomecmS_2_101_'+'
AAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATT
CCCCTAGACCTGATACAGGAATCGTGTCAGGTCTTTTTTT
>CP007448.1:c2720978-2720877 Yersinia enterocolitica LC20, complete genomecmS_1_102_'+'
ACGGCTGAATAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>CP011975.1:c24075-23974 Yersinia aleksiciae strain 159, complete genomecmS_1_102_'+'
ACGGCTGAATAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCTTTTT
>FO704550.1:1733914-1734015 Xenorhabdus doucetiae str. FRM16 chromosome, complete genomecmS_2_102_'+'
GGTAAGTTGTTCTACGTCTCAATGGTAACTTTTAGCGCAAGGCTCTTTGATAGAGCCATT
TTTCCCTAGGCCGAGTAGAGGAGTGAACTCGGCCTTTTTTT
>CP003488.1:c165752-165654 Providencia stuartii MRSN 2154, complete genomecmS_2_99_'+'
ATTGTACTTTGTTACGTCTCAATGGCAATTTTTAGCGCACGGCTCTGCCAGAGCCATTTC
CCAAGGCCCGGTAATCGGAATCTACCAGGCCTCTTTTT
>CP003776.1:2092628-2092727 Pectobacterium carotovorum subsp. carotovorum PCC21, complete genomecmS_1_100_'+'
AGGGCTAGTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>AP012032.2:c1806080-1805984 Pantoea ananatis AJ13355 DNA, complete genomecmS_2_97_'+'
AAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCC
TGGACCGAATACAGGAATCGTGTTCGGTCTTTTTTT
>FR719191.1:c140556-140457 Erwinia amylovora ATCC BAA-2158, whole genome shotgun sequence, contig 11cmS_2_100_'+'
CAGGTCACAACGCCTGCAAGAACACCAACTTTTAGCGCACGGCTCCTTAAAGAGCCATTC
CCTTGGACTGAAGACAGGATTTGTCTTCAGTCTTTTTTT
>LN907827.1:2198458-2198555 Erwinia sp. EM595 genome assembly EM595, chromosome : 1cmS_2_98_'+'
AAGGCGAAGACGCCTGCGTAATGCCAACTTTTAGCGCACGGCTCACCAAGAGCCATTTCC
CTGGACCGGATACAGGAATCGTATTCGGTCTTTTTTT
>KX126088.1:155-255 Uncultured bacterium clone AmoxDisc_TwinA_Time1_TRSX_1354 genomic sequencecmS_2_101_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTT
>CP006664.1:c3666246-3666148 Edwardsiella tarda 080813, complete genomecmS_2_99_'+'
AAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGCCAGGTCTTTTT
>CP008905.1:c2721290-2721190 Enterobacter cloacae ECR091, complete genomecmS_1_101_'+'
AAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP016889.1:c3968610-3968510 Pantoea agglomerans strain C410P1, complete genomecmS_2_99_'+'
AAGGCGACATCGCCTTCATAAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTC
CCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>LT596221.1:c2617251-2617151 Yersinia pseudotuberculosis isolate NZYP4713 genome assembly, chromosome: 1cmS_2_101_'+'
CGGCTGAATAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTAGACCGAATATCAGGAATCGTATTCGGTCTTTTT
>CP007044.2:c4053058-4052957 Chania multitudinisentens RB-25, complete genomecmS_1_102_'+'
ATGGCTGAGTAAGCCCTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCC
ATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTT
>CP000800.1:c2050802-2050702 Escherichia coli E24377A, complete genomecmS_2_101_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTT
>CP019986.1:876234-876334 Citrobacter werkmanii strain BF-6, complete genomecmS_2_101_'+'
AGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTT
>CP002272.1:2061585-2061685 Enterobacter lignolyticus SCF1, complete genomecmS_1_101_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>LT799040.1:3587645-3587745 Kosakonia oryzae strain D4 genome assembly, chromosome: IcmS_1_101_'+'
CAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP009450.1:3088163-3088263 Pluralibacter gergoviae strain FB2, complete genomecmS_2_101_'+'
AAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGACTCGTATTCGGTCTCTTTT
>CP015774.1:c2731744-2731644 Lelliottia amnigena strain ZB04, complete genomecmS_2_101_'+'
CAGGCGACTTCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTT
>CP004141.1:1694049-1694149 Edwardsiella piscicida C07-087, complete genomecmS_2_101_'+'
AAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGTTAGGTCTTTTTTT
>CP019413.1:1345507-1345607 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536, complete genomecmS_2_101_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTT
>CP019412.1:c1881508-1881409 Salmonella enterica subsp. enterica serovar Koessen str. S-1501, complete genomecmS_3_100_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTT
>CP012264.1:c2528730-2528630 Cronobacter condimenti 1330 strain LMG 26250, complete genomecmS_1_101_'+'
AAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP007215.3:1977819-1977919 Enterobacter sacchari SP1, complete genomecmS_1_101_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTTTTTTT
>CP004887.1:2908622-2908722 Klebsiella michiganensis HKOPL1, complete genomecmS_2_101_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTT
>CP015137.1:c4453615-4453515 Dickeya solani IPO 2222, complete genomecmS_3_101_'+'
TTGTGATGCAGCCCGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTT
>CP011104.1:4153878-4153972 Photorhabdus temperata subsp. thracensis strain DSM 15199, complete genomecmS_2_95_'+'
TGTAAGTTGTTTACGTCTCAATGACACTTTTAGCGCACGGCTCTTAAGAGCCATTTTCCC
TGGGCCGAGTAGAGGAGTCAACTCGGCCTTTTTT
>CP002206.1:c1728657-1728557 Pantoea vagans C9-1, complete genomecmS_2_99_'+'
AAGGCGACACCGCCTTCATAAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTC
CCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>CP012266.1:c2666611-2666511 Cronobacter dublinensis subsp. dublinensis LMG 23823, complete genomecmS_2_101_'+'
AAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTT
>CP000266.1:c1887697-1887597 Shigella flexneri 5 str. 8401, complete genomecmS_1_101_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP012833.1:c2609373-2609273 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588, complete genomecmS_2_101_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTT
>CP001891.1:1893246-1893345 Klebsiella variicola At-22, complete genomecmS_2_100_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTT
>AP010953.1:c2582241-2582142 Escherichia coli O26:H11 str. 11368 DNA, complete genomecmS_2_100_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTT
>HG326223.1:1278773-1278873 Serratia marcescens subsp. marcescens Db11, complete genomecmS_1_101_'+'
ACGGCTGAACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGC
CATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTT
>CP007025.1:4384346-4384446 Escherichia albertii KF1, complete genomecmS_2_101_'+'
AAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAAAACAGGAATCGTTTTCGGTCTCTTTT
>CP006929.1:c2041783-2041683 Dickeya zeae EC1, complete genomecmS_2_101_'+'
GTTGTGATGCAACTTGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTT
>CP002038.1:c2301150-2301050 Dickeya dadantii 3937, complete genomecmS_4_101_'+'
TGCGATGCAGTCCGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATT
TCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTT
>CP004345.1:2178255-2178355 Morganella morganii subsp. morganii KT, complete genomecmS_2_96_'+'
AGGTTGTACGATATTTTCAATGGCAATTTTAGCGCACGGCTCGCTATGAGCCTTTTTCCC
TGGACCGGATAGAGGACTTTATCCGGTCTCTTTTT
>CP009459.1:c3793781-3793681 Cedecea neteri strain ND14a, complete genomecmS_1_101_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTTTTTTT
>CP002246.1:c2731642-2731542 Yersinia enterocolitica subsp. palearctica 105.5R(r), complete genomecmS_2_101_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTT
>AM286415.1:1991569-1991669 Yersinia enterocolitica subsp. enterocolitica 8081 complete genomecmS_2_101_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCTTT
>BX571868.1:c65479-65384 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 10/17cmS_2_96_'+'
TGTAAGTTGTTTTTCGTCTCAATGACACTTTTAGCGCACGGCTCTTAAGAGCCATTTTCC
CTAGGCCGAGTAGAGGAGTCAACTCGGCCTTTTTT
>FR904232.1:125302-125402 Serratia symbiotica SCt-VLC genomic scaffold 03cmS_2_96_'+'
GATAAATTATGCACTAAACGCCAACTTTTAGCGCATGGCTCTCCTAGGAGCCATTTCCCT
AGACCGAATATAGGAATCGTATTCGGTATTTTTTT
>AL513382.1:c1933791-1933692 Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete chromosomecmS_2_100_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTT
>CP017727.1:c2640432-2640332 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26, complete genomecmS_1_101_'+'
GAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP006569.1:1949744-1949846 Sodalis praecaptivus strain HS1, complete genomecmS_2_103_'+'
AGGACGTTAAAAGCCTACGAAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCC
ATTTCCCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTT
>CP015613.1:2066731-2066831 Serratia plymuthica PRI-2C, complete genomecmS_1_101_'+'
ATGGCTGAACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGC
CATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTT
>CP014608.1:c3347100-3347000 Obesumbacterium proteus strain DSM 2777, complete genomecmS_2_101_'+'
AAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTACCCTAGACCTGATACAGGAATCGTATCAGGTCTCTTT
>FN392235.1:1802197-1802297 Erwinia pyrifoliae DSM 12163 complete genome, culture collection DSM:12163cmS_2_99_'+'
AGGCCACAACGGCTGCAAGAACACCCACTTTTAGCGCACGGCTCTGTCAAGAGCCATTAC
CTTGGACTGAAGACAGGATTTGTCTTCAGTCTTTTTTT
>CP001600.2:c1730897-1730798 Edwardsiella ictaluri 93-146, complete genomecmS_2_100_'+'
AAGGCACTCAATGCTTGCATAATGCCAATTTTTAGCGCACGGCTCGACAATAAGAGCCCT
TCCCATAGACCTGACACAGGAATCGTGACGGGTCTTTTT
>CP017581.1:c3065890-3065790 Pantoea stewartii subsp. stewartii DC283, complete genomecmS_2_98_'+'
AAGGCGAAAGCCTGAACGAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCCTTTCCC
TGGACCGAATACCTGGAATAGTGTTCGGTCTTTTTTT
>LN854557.1:2137256-2137356 Sodalis glossinidius str. 'morsitans' isolate B4 genome assembly, chromosome: SgGMMB4_chromosomecmS_2_101_'+'
AGGACATCAAAAGCCTACAAAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAGAGCCAT
TTCCCTGGACAGAATATAGGAATCGTATTCGATTTTTTTA
>AB246758.1:1-100 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 small RNA having structural similarity with ryeB small RNAcmS_1_100_'+'
AGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATT
TCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTTT
>CP002433.1:c2487497-2487397 Pantoea sp. At-9b, complete genomecmS_2_99_'+'
AAGGCGACCTCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCAAAGAGCCATTTC
CCTGGACCGGATACAGGAATCGTATTCGGTCTTTTTTT
>FO704551.1:1480857-1480957 Xenorhabdus poinarii str. G6 chromosome, complete genomecmS_2_101_'+'
GGCAAGTTGTTCTACGTCTCAATGGCAATTTTTAGCGCGGGGCTCCTTGATTGAGCCATT
TTTCCCTAGGCCGAGTATAGGAATCGACTCGGCCTCTTTT
>FN667741.1:c2526139-2526040 Xenorhabdus bovienii SS-2004 chromosome, complete genomecmS_2_100_'+'
GGTAGGTTGTTCTACGTCTCAATGGTAGTTTTTAGCGCAAGGCTTTTTGATAGAGCCATT
TTCCATAGGCCGAGTAGAGGAGTATACTCGGCCTTTTTT
>HF571988.1:2132995-2133095 Yersinia enterocolitica (type O:5) YE53/03 complete genomecmS_2_101_'+'
ATGGCTGAACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTATTT
>CP003244.1:c3129933-3129833 Rahnella aquatilis CIP 78.65 = ATCC 33071, complete genomecmS_1_101_'+'
ACGGCTTAACCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTTTT
>CP002505.1:c3129367-3129268 Rahnella sp. Y9602, complete genomecmS_3_100_'+'
ACGGCTTAACCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTT
>FM162591.1:2080350-2080445 Photorhabdus asymbiotica ATCC43949 complete genomecmS_2_96_'+'
TGTAAGTTGTTTTACGTCTCAATGACACTTTTAGCGCACGGCTCTTAAGAGCCATTTTCC
CTAGGCCGAGTAGAGGAGTCAACTCGGCCTTTTTT
>CP009364.1:c1590742-1590642 Yersinia frederiksenii Y225, complete genomecmS_2_101_'+'
ATGGCTGAGTAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTT
>CP009781.1:c825291-825192 Yersinia aldovae 670-83, complete genomecmS_1_100_'+'
AAGGCTGAATAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCTTT
>BX950851.1:c2786789-2786689 Erwinia carotovora subsp. atroseptica SCRI1043, complete genomecmS_2_101_'+'
AGGGCTAGTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACTGAATACAGGAATCGTATTCAGTCTTTTTTT
>CP000826.1:2129607-2129707 Serratia proteamaculans 568, complete genomecmS_1_101_'+'
ACGGCTGAACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGC
CATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTT
>FN545154.1:c19315-19215 Arsenophonus nasoniae whole genome shotgun assembly, contig scaffold00140cmS_2_97_'+'
ATAGCATTTTGTTACGTCTCTATGACACATTTTAGCGCACGGCTCTCTAGAGCCATTTCC
CAAGACCGAGTATTGGAATTAGCTCGGTCTCTTTTT
>CP002154.1:1692511-1692611 Edwardsiella tarda FL6-60, complete genomecmS_2_101_'+'
AAGGCACTCAATGCCTGCATAATACCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATT
CCCCTAGACCTGACACAGGAATCGTGTTAGGTCTTTTTTT
>CP020466.1:c405384-405284 Edwardsiella ictaluri strain RUSVM-1, complete genomecmS_2_101_'+'
AAGGCACTCAATGCTTGCATAATGCCAATTTTTAGCGCACGGCTCGACAATAAGAGCCCT
TCCCATAGACCTGACACAGGAACCGTGACGGGTCTTTTTT
>CP007448.1:c2720979-2720879 Yersinia enterocolitica LC20, complete genomecmS_2_101_'+'
ACGGCTGAATAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCA
TTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTTTT
>LN681227.1:c1827231-1827132 Xenorhabdus nematophila AN6/1 genome assembly XNC2, chromosome : IcmS_2_100_'+'
GTTAAGCTGTTCTACGTCTCAATGACAATTTTTAGCGCACGGCTCTTTGAGAGAGTCATT
TTCCCTAAGCCGAGTAGAGGAGTAGACTCGGCCTTTTTT
>FO704550.1:1733914-1734014 Xenorhabdus doucetiae str. FRM16 chromosome, complete genomecmS_2_101_'+'
GGTAAGTTGTTCTACGTCTCAATGGTAACTTTTAGCGCAAGGCTCTTTGATAGAGCCATT
TTTCCCTAGGCCGAGTAGAGGAGTGAACTCGGCCTTTTTT
>CP006736.1:c1029973-1029873 Shigella dysenteriae 1617, complete genomecmS_2_101_'+'
AAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTT
>CP019035.1:c2908022-2907922 Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genomecmS_3_101_'+'
AAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
CTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTT
>CP003488.1:c165752-165652 Providencia stuartii MRSN 2154, complete genomecmS_2_99_'+'
ATTGTACTTTGTTACGTCTCAATGGCAATTTTTAGCGCACGGCTCTGCCAGAGCCATTTC
CCAAGGCCCGGTAATCGGAATCTACCAGGCCTCTTTTT
>CP011602.1:c2559605-2559505 Kluyvera intermedia strain CAV1151, complete genomecmS_1_101_'+'
AAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP001560.1:c1795634-1795534 Shimwellia blattae DSM 4481 = NBRC 105725, complete genomecmS_1_101_'+'
AGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>CP003776.1:2092627-2092727 Pectobacterium carotovorum subsp. carotovorum PCC21, complete genomecmS_2_101_'+'
AGGGCTAGTACAGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCCCAAGAGCCATT
TCCCTAGACCGAATACAGGAATCGTATTCGGTCTTTTTTT
>AP012032.2:c1806080-1805980 Pantoea ananatis AJ13355 DNA, complete genomecmS_2_97_'+'
AAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCC
TGGACCGAATACAGGAATCGTGTTCGGTCTTTTTTT
>FR719191.1:c140556-140456 Erwinia amylovora ATCC BAA-2158, whole genome shotgun sequence, contig 11cmS_2_100_'+'
CAGGTCACAACGCCTGCAAGAACACCAACTTTTAGCGCACGGCTCCTTAAAGAGCCATTC
CCTTGGACTGAAGACAGGATTTGTCTTCAGTCTTTTTTT
>CP002124.1:c3375541-3375441 Erwinia sp. Ejp617, complete genomecmS_2_99_'+'
AGGCCACAACGGCTGCAAGAACACCCACTTTTAGCGCACGGCTCTGTCAAGAGCCATTAC
CTTGGACTGAAGACAGGATTTGTCTTCAGTCTTTTTTT
>CP007557.1:c4183134-4183034 Citrobacter freundii CFNIH1, complete genomecmS_2_101_'+'
AGGGTAACTTAGCCTGCATTTATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCAT
TTCCCTGGACCGAATACAGGAATCGTATTCGGTCTCTTTT
>LN681227.1:c1827231-1827131 Xenorhabdus nematophila AN6/1 genome assembly XNC2, chromosome : IcmS_2_101_'+'
GTTAAGCTGTTCTACGTCTCAATGACAATTTTTAGCGCACGGCTCTTTGAGAGAGTCATT
TTCCCTAAGCCGAGTAGAGGAGTAGACTCGGCCTTTTTTT
eggzilla commented 7 years ago

Hey, sorry for the delayed answer, I will look into it. I suspect it is either a problem with the BLAST REST interface or a regression. Could you dump the zipped results of the job with fewer hits somewhere?

riasc commented 7 years ago

Sorry for the late reply. Here are the results: https://bwsyncandshare.kit.edu/getlink/fi7gLohM5dFuYBd2ewtiKuhu/90370.tar