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egluckthaler / starfish

starfish: a modular toolkit for giant mobile element annotation
GNU Affero General Public License v3.0
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starfish consolidate question #10

Closed JWDebler closed 3 months ago

JWDebler commented 3 months ago

Hi there,

the step-by-step instructions say to use:

xxx_tyr.filt_intersect.gff.

However, after running the geneFinder module I don't have a file like that. I do however have: xx_tyr.filt.gff xx_tyr.ntersect.gff xx_tyr.gff

Which of those should I use as the -G argument for starfish consolidate?

Cheers

JWDebler commented 3 months ago

just saw the comment a bit later in the document to look for files with the suffix .filt.).

Maybe move that up to where the command is run. Cheers

egluckthaler commented 3 months ago

thanks Johannes, will do