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egonozer / in_silico_pcr

Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
GNU General Public License v3.0
37 stars 12 forks source link

Use of this script as HTS way with hundred or thousands of genomes #5

Open AhmedElsherbini opened 2 years ago

AhmedElsherbini commented 2 years ago

For those who aim to use Egon's script in an HTS way with hundred of genomes, I adapted his script via a bash script. Kindly see my page and cite us both Also, you can get a tree and alignment files for your amplicons.

https://github.com/AhmedElsherbini/HTS_insilico_PCR