Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
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reproduce scripts in "Bioclipse 2: A scriptable integration platform for the life sciences" #118
Paper: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-10-397