Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
For users that do not have Maven installed (but Ant for example), add a link to page explaining installation: https://www.baeldung.com/install-maven-on-windows-linux-mac (worked fine for me).