Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
A short code example where the API method is used.
// Demo showing the Oscar text mining functionality
var html = "<html><body>Benzene and toluene.</body></html>";
var text = oscar.extractText(html);
var mols = oscar.findResolvedNamedEntities(text);
var file = "/Oscar Demo/extractedMols.sdf";
cdk.saveSDFile(file, mols);
ui.open(file);
egonw
commented
3 years ago
oscar.extractText() and .findResolvedNamedEntities()
Method described in this 2011 paper.
Plugin source code is available from: https://github.com/bioclipse/bioclipse.oscar
Example use
A short code example where the API method is used.