Rm functions out of manuscript and into ManyEcoEvo pkg + pipeline

[egouldo]

See issue https://github.com/egouldo/ManyEcoEvo/issues/29

The following functions are to be moved to software pkg, checking for:

• fn exists, or isn't renamed in ManyEcoEvo
  • if exists, arguments are the same order and name
  • if exists, delete in ManyAnalysts repository
• fn does not exist in ManyEcoEvo:
  • move or copy function into ManyEcoEvo
  • write Roxygen2 documentation with help of GH co-pilot
  • Rebuild package
  • Can or should, application of function be moved to targets pipeline?
  • If so, move into targets pipeline,
    • source tar_make.R
    • Rebuild package
    • Update version number major.
  • If not, Ensure application in either ManyEcoEvo matches argument names, total number and position.

• [x] fit_MA_mv

https://github.com/egouldo/ManyAnalysts/blob/91ca56a15ab2630054e7391b9b90a2dc974feb65/index.qmd#L2923-L2931 https://github.com/egouldo/ManyAnalysts/blob/91ca56a15ab2630054e7391b9b90a2dc974feb65/supp_mat/SM2_EffectSizeAnalysis.qmd#L721-L729 https://github.com/egouldo/ManyAnalysts/blob/91ca56a15ab2630054e7391b9b90a2dc974feb65/supp_mat/SM3_ExplainingDeviation.qmd#L48-L61

• [ ] plot_forest
• [ ] plot_forest_2 (and what's the difference)?
• [ ] consider adding create_model_workflow, could wish to leave in manuscript
• [ ] possibly_check_convergence_glm
• [ ] plot_model_means_RE
• [ ] walk_plot_effects_diversity
• [x] logged Euc analysis

See egould/ManyEcoEvo/

[egouldo]

fit_MA_mv()

• All versions of fit_MA_mv in ManyAnalysts are equal
• Note that fit_MA_mv is a wrapper function around fit_metafor_mv, and calls it explicitly.
• [x] move fun into ManyEcoEvo
• [x] rm from ManyAnalysts

Either:

• [ ] update calls in ManyAnalysts with ManyEcoEvo::fit_MA_mv OR
  • move calls into targets pipeline?