118 log transform yi - Githubissues

#118 add option to log_transform() in prepare_response_variables()
#118 create log_transform_yi()
Fix #118 apply log-transformation in prepare_response_variables() - #118 adapt response variable preparation to accept additional argument dataset_log_transform apply argument checks #116, add roxygen param #102 - #118 adapt response variable processing to accept either/or/none for dataset standardisation/log-transformation.
#116 #97 update argument checks
Update pred_toZ()
Update standardise_response()
#118 update process_response() to match log-transformation and standardisation updates
#118 add function log_transform_response()
#118 update application of prepare_response_variables() in targets pipeline
#118 #97 #102 devtools::document()
Increment version number to 2.5.0
#118 rm call to redundant arg in pred_to_Z()
upgrade '2.5.1' to Version
#118 delete prev. data assignment occurring in middle of unfinished addition
#118 Increment version and update description
#118 rm redundant code erroneously left-behind
#97 increment patch version
#118 replace second .x arg with .y arg in map2() call
#118 fix omission of case when estimate_type is Zr and NULL args supplied for standardising / transformation
increment patch version #97
#118 assign names to fns stored in tibbles
*#118 update arguments in _response() fns - dat to data to help with auto-matching in pmap within prepare_response_variables() wrapper #118 - ensure all family fns have ... arg for pmap application in prepare_response_variables() since all fns have different argument lengths and names**
#118 mv fn-specific arguments out of topic roxygen block
#91 remove arg matching for ManyAnalysts specific datasets
#118 #102 add example code for standardise_response() and update example code for log_transform_response()
#118 add ... arg for using in pmap
#118 #102 update seealso doc
#97 update cli formatting
- #118 add pmap internal helper function for differential application of transformation / standardisation in standardise_response() - #118 delete old pmap helper function
#118 add ... arg to prepare_response_variables()
#118 #102 add example code
- Update arg supply to targets call on prepare_response_variables() after #118 updates
#102 #118 devtools::document()
#97 update version description
#97 fledge::update_news()
#118 #102 export log_transform_response()
#118 add check for col estimate_type existing, create it when FALSE
- #118 docs: Add explanation about updated behaviour when estimate_type is missing in ManyEcoEvo dataframe - #118 build: devtools::document()
Increment version number to 2.6.0.9000
#97 docs: update news
#118 #97 make new name for processed output and return object using new name
#118 fix: conditional application of log_transform_yi
#88 fix: ensure log_transform also calculates SE and not SD
Increment version number to 2.6.0.9001
#118 update generate_yi_subsets() to deal with changes in prepare_response_variables() that now create estiamte_type col
#97 rm todos
Increment version number to 2.6.0.9002
- refactor!: exposed argument in exclude_extreme_VZ() to allow differenc VZ colnames (i.e. from log_transform_response()) #118 - refactor!: apply_VZ_exclusions() to handle different out-of-sample colnames for each dataset #118
docs: Update documentation for most functions
update comments and lint spacing #97
build!: update call to apply_VZ_exclusions() after 02d058e0a29185437ef4b5cf4ae22b99f5ad0ae2 #118
build!: increment version and devtools::document() #118 #97
fix: Fix roxygen entries with missing @family tag #118 and devtools::document()
docs: update roxygen documentation
style: save intermediate output to object out and return
style: namespace function call
feat: Add pointblank:: column checks and user warnings #116
fix: wrap column names in c() when checking if exist #116
style!: replace call to pointblank::cars() with c() since is superceded and add arg checking #116
bug: don't use reserved data pronoun as argument .data
docs!: switch to import from importFrom #102 style: linespacing / and indentation #97
fix!: breaking changes to generate_outlier_subsets()
feat!: update downstream fns #118
style: linespace / indentation linting bug: comment typo
bug: fix improper mixing of cli braces in calls to glue::glue, switch to c()
style: indentation / linespacing
feat: add argument checks #116 #97
bug!: replace transmute with mutate in addition to .keep = unused arg for Zr case (i.e. when estimate_type is supplied).
*style!: explicitly call by = arg on joins docs: Add @details and @import` tags**
style: indentation #97
bug!: fix cli expressions, rm improper use of glue::glue() #97 bug!: #118 ensure estimate_type column is added back in using argument value if existing col is replaced and stop grouping on returned data frame
bug!: fix @imports #97 #102
feat: expose poss_fit_sorensen_glm()
docs!: fix broekn links to topics in roxygen2 markdown
docs!: devtools::document()
build!: update targets pipeline to reflect all #118 changes
Increment version number to 2.6.0.9004
feat!: update downstream fn meta_analyse_datasets() post-#118 updates
feat!: update meta-analysis function arguments cf. changes in bdf53750 #118
bug!: bug-fixes after testing #118 on yi pipeline
style: indentation
Increment version number to 2.6.0.9005
build!: fix missing comma between target arguments style: fix indenation
docs!: devtools::document()
- docs!: update @imports #102 - style: use comments to structure function. rearrange condition checks, and helper functions. update indentation. #97
*docs!: #102 add `@import` calls style: fix indentation and spacing #97**
docs!: update @import tags style: fix indentation, spacing, reorganise subsections
add TODO comment
docs!: devtools::document() #102
build!: renv::snapshot()
build!: set pipeline targets seed
build!: BREAKING CHANGES targets::tar_make()
Increment version

egouldo / ManyEcoEvo

118 log transform yi #121

Add a terminal newline.