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ehb54 / nmrsuite

NMR Suite (Fushman lab) GenApp
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PCS, ALTENS, PRE graphical output #2

Open ehb54 opened 3 years ago

ehb54 commented 3 years ago

DF-

PCS, ALTENS, PRE -- all worked smoothly so far, completed their jobs, and stored the data in the folders. However, no graphical outputs were produced.

Working site http://pcs.genapp.rocks/parnmr

It produced all the correct plots (as on our PARNMR poster at Gateways 2019 and the paper that wasn't accepted). The only caveat I found with that site is that the "PREDICT" module is actually not doing prediction but rather does the same analysis as ALTENS. I assume Cheol created it as a placeholder for PREDICT but didn't get to put Matthew's code in it. I am glad that at least one site still works!!! Here are a few snapshots of the outputs: PCS: pcsplots ALTENS: altensrdcplots PRE: preplots

ehb54 commented 3 years ago

PCS, ALTENS & PRE are now working. A correct Bokeh version needed to be defined in the directives.json. Fix here https://github.com/ehb54/nmrsuite/commit/240426f02730c3076a708371541d5c076b4ce381

Note when the plots show up, it "trashes" the layout, (1st column gets squished). This will be addressed when we begin to apply layouts #4