Closed bharath-sub closed 1 year ago
eidelen
commented
4 years ago Hi, Another user, Moritz Moeller, wrote a small summary about vtk-dicom and dicom2mesh: https://github.com/AOT-AG/DicomToMesh/issues/14#issuecomment-443224034 Just for your information: DicomToMesh works also without vtk-dicom. However, there will be fewer support for Dicom formats.
bharath-sub
commented
4 years ago hello, thank u for your reply, I have built vtk-dicom exactly according to the solution mentioned by Moritz Moeller also which u have put up a link in the readme file and the build of vtk-dicom is successful. After that when I build dicomtomesh using vtk-dicom, it shows me a error of not able to find the configuration file of dicom that is DICOMconfig.cmake, that is its not able to find the DICOM_DIR. So i searched for that config file in vtk-dicom to mention its directory in DICOM_DIR and its not there so thats y i dont know where the mistake is or y that file its not being made through cmake?
thanks for that info that dicomtomesh can also work without vtk-dicom, i will make it work like that but i am just trying to build dicomtomesh to be compatible to all formats of dicom(compressed files too) so thats y trying to understand where its going wrong.
Anyways if this doesnt work, i will build dicomtomesh without vtk-dicom as u mentioned.
eidelen
commented
4 years ago Hi again :)
With the command ccmake you can read and edit your projects' cmake parameters. Likely, your DICOM_DIR does not point to the build directory of vtk-dicom. Could you please check that?
...
DICOM_DIR /Users/eidelen/dev/libs/vtk-dicom/build
USE_VTK_DICOM ON
...hello, thank u again for the reply, I just tried the way u said and its still giving me the same error.
""""" Could not find a package configuration file provided by "DICOM" with any of the following names:
DICOMConfig.cmake
dicom-config.cmake """"""The thing is, the build directory of vtk-dicom needs to contain the file DICOMconfig.cmake and then if i mention this path in DICOM_DIR it will work but here the case is that there is no file such as DICOMconfig.cmake in the build directory of vtk-dicom thats y even if i mention the path of the build directory of vtk-dicom, it gives me the error of not able to find the dicomconfig file.
eidelen
commented
4 years ago Then its seems to be an issue of vtk-dicom. Even though I am not involved in this project, maybe I can help you by showing a subset of my vtk-dicom cmake configuration.
BUILD_SHARED_LIBS ON
CMAKE_BUILD_TYPE RELEASE
USE_DCMTK OFF
USE_GDCM OFF
USE_ITK_GDCM OFF
USE_SQLITE ON
VTK_DIR /Users/eidelen/dev/libs/VTK/build Is the BUILD_SHARED_LIBS on? My vtk-dicom build directory looks like the following
CMakeCache.txt
CMakeFiles
DICOMConfig.cmake
DICOMConfigVersion.cmake
DICOMTargets.cmake
DartConfiguration.tcl
Makefile
Source
Testing
UseDICOM.cmake
cmake_install.cmake
libI am using the vtk-dicom version v0.8.7
bharath-sub
commented
4 years ago Hello, Thank u so much for ur reply,
Now i am getting the file DICOMconfig.cmake when i downloaded ur version of vtk-dicom that is v0.8.7 and dicomtomesh is also built successfully. I think there is a problem with the current version of vtk-dicom which is v0.8.12, where the config files of dicom are not being made in build directory after build.
eidelen
commented
4 years ago I will have a look at the new version of vtk-dicom.
eidelen
commented
4 years ago Hi again, I checked with the newest version of vtk-dicom (master, commit 3ac3bb23f11a4feb659a8804f41697066c83d837, May this year) and it worked. Maybe there was some other issue before.
bharath-sub
commented
4 years ago Hello,
Just one thing, can u tell me after building the latest version of vtk-dicom, was the DICOMconfig.cmake file in the build directory of vtk-dicom?
if u dont mind, can u show me ur build directory of vtk-dicom?
eidelen
commented
4 years ago Hi, I just ran into the same problem when using the newest VTK, v. 9.0.0, together with the newest vtk-dicom version. No DICOMconfig.cmake file. I have to do some further investigations.
issacclee
commented
3 years ago Hi, I just ran into the same problem when using the newest VTK, v. 9.0.0, together with the newest vtk-dicom version. No DICOMconfig.cmake file. I have to do some further investigations.
Hi Eidelen, I ran into the same problem, did u manage to solve it?
eidelen
commented
3 years ago Unfortunately not. My assumption is that it is a vtk-dicom issue. Here is a temporary solution mentioned - I didn't try it myself. https://github.com/microsoft/vcpkg/pull/12839
BTAROCKET
commented
3 years ago Hi，I used the xx.dcm format as input, but still got the same problem. I want to konw what is the input format. Could you help me ? Thanks a lot.
Input directory: /root/wrp/CT Output file path: mesh.stl Surface segmentation: 557 Mesh reduction: disabled Mesh polygon limitation: disabled Mesh smoothing: disabled Mesh centering: disabled Mesh filtering: disabled Volume cropping: disabled
Using standard DICOM loader Read DICOM images located under /root/wrp/CT Progress: done
Create surface mesh with iso value = 557 Progress: 0.0%ERROR: In /build/vtk6-VHOYAG/vtk6-6.3.0+dfsg1/Filters/Core/vtkMarchingCubes.cxx, line 417 vtkMarchingCubes (0x55a866404970): Cannot contour data of dimension != 3
Progress: done
No mesh could be created. Wrong DICOM or wrong iso value
eidelen
commented
3 years ago Hi, Sorry for my late answer. It seems that your DICOM is not a volume. Also, often there are several image data sets in one DICOM. Would it be possible to send me a sample? Thx, Adrian
eidelen
commented
1 year ago @bharath-sub I am closing this issue. Feel free to reopen it. Thx, Adrian
hello, I have built vtk-dicom by dgobbi successfully and after that when i am trying to build dicomtomesh, am getting an error of not able to find DICOMconfig.cmake file. The thing is, after i built vtk-dicom, the file DICOMconfig.cmake should have been made but its not, so I am not able to understand how do i get that file?
I have built vtk-dicom exactly the way it was mentioned by dgobbi and also as mentioned in the dicomtomesh.
plss help!