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eisfabian / PACEtomo

Parallel cryo electron tomography via beam image shift
GNU General Public License v3.0
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Out-of-bounds function code of 615 #13

Closed MoritzWM closed 1 year ago

MoritzWM commented 1 year ago

Hi, we recently updated to SerialEM 4.0.20. Since then, selectTargets.py throws the following exception:

External script interpreter passed an out-of-bounds function code of 615 (maximum is 603)

The error occurs just after confirming the tracking target. I'm not sure if this is a SerialEM bug or a PACEtomo bug, so I thought I would report it here. I can also try and narrow down where the bug appears after the Easter holidays.

eisfabian commented 1 year ago

Hi Moritz,

On what previous version of SerialEM did it run fine? I do use some functions that are only available in 4.1beta versions. But the error message would probably be different if that was the only problem. Which version of the selectTargets script are you using? Did you downgrade SerialEM from 4.1 by any chance?

Best wishes, Fabian

yay110 commented 1 year ago

Dear both,

I guess this issue is related to the sem.py Python module that doesn't have the required python function. I would guess the error will pop up when using a new Python script but not after updating serialEM.

Best wishes Zhengyi

MoritzWM commented 1 year ago

Hi both, I think it's because we accidentally rolled back SerialEM... so Fabian is right, it was on 4.1 before. We'll go back to 4.1, but I guess we can assume then it will work again.