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ejh243 / BrainFANS

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq
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[Bug]: Outdated full links #110

Open sof202 opened 5 months ago

sof202 commented 5 months ago

Contact Details

No response

What happened?

here is a list of files that are pointing to gpfs

general/processing/outputFileSizes array/SNParray/utilitys/summarizeCNVCalls integrative/chromHMM/processing/createAnnotationFiles.r sequencing/ATACSeq/preprocessing/CreateFACS_SFARI_fetalSamplesDatalFileForDB.r sequencing/DNAhydroxy/jobSubmission/peakCalling5hmCIncreasingSampleSizes.sh sequencing/DNAhydroxy/preprocessing/QCSummary.rmd

Realistically, there should be no full or relative file paths anywhere for maximum portability.

How can the bug be reproduced?

No response

Relevant log output

No response

ejh243 commented 3 weeks ago

@ew367 could we archive these files as not clear how these fit into pipeline:

sequencing/ATACSeq/preprocessing/CreateFACS_SFARI_fetalSamplesDatalFileForDB.r general/processing/outputFileSizes

ew367 commented 3 weeks ago

@ew367 could we archive these files as not clear how these fit into pipeline:

sequencing/ATACSeq/preprocessing/CreateFACS_SFARI_fetalSamplesDatalFileForDB.r general/processing/outputFileSizes

@ejh243 they can be deleted