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ejh243 / BrainFANS

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq
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[Bug]: DNAm QC pipeline sex check thresholds #152

Open ejh243 opened 3 months ago

ejh243 commented 3 months ago

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What happened?

A number of samples are not having sex predicted as thresholds are too conservative. Suggest we learn thresholds from the data rather than hardcode them.

In addition would be useful to output a list of samples for which sex could not be predicted.

How can the bug be reproduced?

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Relevant log output

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