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ejh243 / BrainFANS

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq
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[Code Refactor]: Unneeded download files #156

Open sof202 opened 4 months ago

sof202 commented 4 months ago

Contact Details

No response

Path to affected files

general/processing/downloadCommonMind.r
general/processing/downloadPsychEncode.r

Type of refactor

Code Deletion

Description of required code refactor

Although these files still have use, do they really need to be in the BrainFANS repository specifically? These files can only be used by one person (ejh243) and aren't necessarily completely relevant to the pipelines BrainFANS provides.

Yes our group has used (or plan to use) the data from CommonMind and PsychEncode, but these are not required for any pipelines.

We can safely move these download scripts to a separate repository if they need to be backed up, but I don't see why they need to be in this repository specifically.

sof202 commented 4 months ago

This also applies to the related shell scripts in 'general/jobSubmission'