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ejh243 / BrainFANS

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq
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[Enhancement suggestion]: Check variables exist before execution #184

Closed ejh243 closed 2 months ago

ejh243 commented 2 months ago

Contact Details

e.j.hannon@exeter.ac.uk

Enhancement suggestion

At the top of scripts that depend on variables defined in the config files, to check they exist and print helpful error messages if they do not.

ew367 commented 2 months ago

Resolvedby adding Rscript checkRconfigFile.r ${DATADIR} to the pipeline