[Code Refactor]: only run cortical clock for brain samples

ejh243 / BrainFANS

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq

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[Code Refactor]: only run cortical clock for brain samples #229

Open ew367 opened 1 day ago

ew367 commented 1 day ago

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Path to affected file

calcQCmetrics.r

Type of refactor

Code optimisation

Description of required code refactor

The code currently runs the coritcal clock age predictor regardless of sample type, but it is only applicable to brain data. It could be turned off/on using config input ( if (tissueType == "Brain") )