This pull request will add a standalone script to filter to autosomal probes.
It adds a extra layer to the gds file with a betas matrix for just the autosomal probes, and also saves the matrix and QCmetrics file as a standalone object in the the 3_normalised directory.
Type of pull request
[ ] Bug fix
[x] New feature/enhancement
[ ] Code refactor
[ ] Documentation update
Checklist
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[x] I have tested my code to check that it is functional
[ ] I have used linters to check for common sources of errors
[ ] I have implemented fail safes in my code to account for edge cases
[ ] I have made the corresponding changes to the documentation
Description
This pull request will add a standalone script to filter to autosomal probes.
It adds a extra layer to the gds file with a betas matrix for just the autosomal probes, and also saves the matrix and QCmetrics file as a standalone object in the the 3_normalised directory.
Type of pull request
Checklist