pabloalarconm
commented
1 year ago Now reorganization of the Github repos: Implementation repo contains one single glossary with each individual data element requirement description: https://github.com/ejp-rd-vp/CDE-semantic-model-implementations/blob/master/CDE_version_2.0.0/CSV_docs/glossary.md
Each model from the wiki is linked to this Markdown file so the documentation is completed and easily accesible for every data element. Exemplar data is also located in every data element wiki page
Maybe this issue is for tooling independent implementors (the ones not (yet) using FAIR in a box). Please make sure all needed info to implement the model can be found in one place, or at least indexed in one place so that users can find it easily.
-Diagrams: https://github.com/ejp-rd-vp/CDE-semantic-model/tree/master/docs -Unified structure: https://github.com/pabloalarconm/PERSEO/blob/main/cde_implementation/sparql/complete_cde_model.ttl -Modules/context dependent OBO types a.k.a. glossary: https://github.com/ejp-rd-vp/CDE-semantic-model-implementations/blob/master/CDE_version_2.0.0/CSV_template_doc/unified_csv_template.md
Thanks to a meeting w Pablo I could take notes/steps to implement the model that cannot be found in one-only Readme: -check glossary: https://github.com/ejp-rd-vp/CDE-semantic-model-implementations/blob/master/CDE_version_2.0.0/CSV_template_doc/unified_csv_template.md -check the complete model structure here: https://github.com/pabloalarconm/PERSEO/blob/main/cde_implementation/sparql/complete_cde_model.ttl -check diagrams here: https://github.com/ejp-rd-vp/CDE-semantic-model/blob/master/README.md -add (repeat in each module) the SIO structure here: https://github.com/pabloalarconm/PERSEO/blob/main/cde_implementation/sparql/complete_cde_model.ttl -add (repeat in each module) the OBO classes: https://github.com/ejp-rd-vp/CDE-semantic-model-implementations/blob/master/CDE_version_2.0.0/CSV_template_doc/unified_csv_template.md -check that all "option lists" / "one of the following" in your data match the ones described in the glossary and match the CDEs.