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ejp-rd-vp / DistributedAnalysisDemonstrator

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URIs expressed as strings #2

Closed andrawaag closed 3 months ago

andrawaag commented 3 months ago

In the ttl files in the MONARCH_PHENOPACKET_STORE_DATA some of the URIs are expressed as strings and not as URIs. See for example: https://github.com/ejp-rd-vp/DistributedAnalysisDemonstrator/blob/4c7a8734bd45bb8d0480ec52ce44941bdef4f991/MONARCH_PHENOPACKET_STORE_DATA/PMID_26467218_individual10-Kraouaetal23.ttl#L24

If have fixed it manually in PMID_26467218_individual1-DeFilippietal20.ttl.

@rosazwart @NuriaQueralt Do you know if this can be fixed at the source or do we need to do it in all files manually?

rosazwart commented 3 months ago

I indeed had problems with expressing the URIs in URIs instead of literal string values. I will look into it again today. Hopefully I can come up with something that will solve this issue.

rosazwart commented 3 months ago

The RDF files in the folders (HAMLET, PHENOPACKET-STORE) are now containing the URIs expressed as URIs instead of string values. There was an issue in the YARRRML syntax. Now that it is fixed, the RDF files will have URIs in the correct expression format.

Let me know if you find something else that needs to be improved! Will close this issue for now.