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ekawaler / pyQUILTS

Rebuilding QUILTS in Python.
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I used ensemble as the reference sequence, and the output of star's SJ.tab as the input, but I got this error. How should I resolve it? #25

Open chongzhengxia opened 2 months ago

chongzhengxia commented 2 months ago

Traceback (most recent call last): File "/PUBLIC/home/xiachongzheng/GCA-neo/pyQUILTS-master/quilts.py", line 2451, in filter_known_transcripts(args.proteome+'/transcriptome.bed', results_folder+'/log', logfile) File "/PUBLIC/home/xiachongzheng/GCA-neo/pyQUILTS-master/quilts.py", line 1681, in filter_known_transcripts elif end_ex_1 in junctions_alternative[chrm].keys() and beg_ex_2 in junctions_alternative[chrm][end_ex_1]: KeyError: 'chrGL000195.1'

I used ensemble as the reference sequence, and the output of star's SJ.tab as the input, but I got this error. How should I resolve it?