ekg / edyeet

base-accurate DNA sequence alignments using edlib and mashmap2
MIT License
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Changes to -a and -p default parameters #11

Open brettChapman opened 3 years ago

brettChapman commented 3 years ago

Hi Erik

I noticed with Edyeet that the default -p is now 95% and the -a is now set to 0 by default. With previous versions of Edyeet I tended to use the same value for -p and -a, and this was also reflected in older versions of Edyeet's parameters. I'm thinking of using -p 85 now, but with -a should I use the default of 0 or stick with -a 85? Has the behaviour of -a now changed?

I've started to run PGGB using the latest version of each tool. I know this isn't ideal until you've released your big update, but so far it seems to be running ok. Apart from wfmash there are no conflicts with how the PGGB script runs edyeet.