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ekg / gimbricate

recompute GFA link overlaps
MIT License
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'perfectOverlaps' mode #5

Closed RolandFaure closed 4 years ago

RolandFaure commented 4 years ago

Created a 'perfectOverlaps' mode with the flag -P. Useful when using gimbricate+seqwish to get rid of overlaps, but when the overlaps are already exact (when the assembly comes from a De Bruijn assembler, typically). On perfectOverlaps mode, gimbricate does not recompute the overlaps. See issue #2 .

ekg commented 4 years ago

Thank you for this!

RolandFaure commented 4 years ago

It looks good to me but please adjust the README to indicate that the perfect overlap feature is optional.

Done