HHGA should be able to take a model in vw format and apply it to a VCF+BAM combination, yielding an annotated VCF where we have applied class labels in some way that we can use for downstream filtering (such as by changing the QUAL). This will make it possible to evaluate the process end to end.
HHGA should be able to take a model in vw format and apply it to a VCF+BAM combination, yielding an annotated VCF where we have applied class labels in some way that we can use for downstream filtering (such as by changing the QUAL). This will make it possible to evaluate the process end to end.