Does seqwish supports output with nodes as single characters?

ekg / seqwish

alignment to variation graph inducer

MIT License

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Does seqwish supports output with nodes as single characters? #120

Open YX-Xiang opened 10 months ago

YX-Xiang commented 10 months ago

Hi there,

I am using seqwish to build pangenome graph. I would like to inquire if seqwish supports output with nodes as single characters. Could you please confirm if this functionality is available?

Thank you!

ekg commented 10 months ago

Yes, but you will want to use odgi chop -c 1 to make the graph have this format.

YX-Xiang commented 10 months ago

Thank you for the great response! Your answer was really helpful.