ekg / seqwish

alignment to variation graph inducer
MIT License
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please add a possibility to restrict the disk usage of seqwish #122

Open subwaystation opened 9 months ago

subwaystation commented 9 months ago

when running seqwish on our cluster as part of the https://github.com/nf-core/pangenome pipeline, slurm throws weird errors before cancelling the seqwish process

from our current knowledge, seqwish would require more than 3.5TB local scratch space please make seqwish aware of it's disk usage and make it stop to a user define threshold or if you have other ideas, please let me know, thanks!