ekg / seqwish

alignment to variation graph inducer
MIT License
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implement min-repeat-distance filter #42

Closed ekg closed 4 years ago

ekg commented 4 years ago

This behaves like -r 1, but only if the sequences that are being collapsed into the same node are within a given distance.

In effect, setting this to a low number will prevent small self-loops, but allow larger looping copy number variants.