checked duplicate ids in FASTA or FASTQ efficiently

ekg / seqwish

alignment to variation graph inducer

MIT License

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checked duplicate ids in FASTA or FASTQ efficiently #59

Closed AndreaGuarracino closed 4 years ago

AndreaGuarracino commented 4 years ago

the names of the sequences are read from the temporary file which store them (before it is deleted), one name at a time, checking how many times the pattern (the name of the sequence) appears in the CSAWT data structure