terminate called after throwing an instance of 'std::out_of_range'

Hi,

I have a gfa (GFA1) file made by cuttlefish (https://github.com/COMBINE-lab/cuttlefish) and now I want to "bluntify" this gfa file. As suggested on https://github.com/ekg/gimbricate, I use:

gimbricate -g 10_sars-cov-2.gfa -n -f tmp.fa -p tmp.paf > tmp.gfa
seqwish -s tmp.fa -p tmp.paf -g tmp.seqwish.gfa -P

However, this gives me an error:

[seqwish::seqidx] 0.001 indexing sequences
[seqwish::seqidx] 0.033 index built
[seqwish::alignments] 0.033 processing alignments
terminate called after throwing an instance of 'std::out_of_range'
  what():  stol
Aborted

I am not sure whether this problem is caused by gimbricate or by seqwish, but I did notice that in the gfa output of gimbricate CIGAR strings "0M" are removed. When the CIGAR string is for example "24M", it is written as "24=". Also, the PAF file contains extremely large (and impossible) numbers for lines where 0M strings are found in the original gfa, for example:

15867   542 518 542 -   4392    49  25  49  24  0   100 cg:Z:24=
25630   49  25  49  +   15867   542 0   24  24  0   100 cg:Z:24=
15867   542 518 542 -   4392    49  25  49  24  0   100 cg:Z:24=
25630   49  25  49  +   15867   542 0   24  24  0   100 cg:Z:24=
15867   542 518 542 -   4392    49  25  49  24  0   100 cg:Z:24=
25630   49  25  49  +   15867   542 0   24  24  0   100 cg:Z:24=
15867   542 18446744072793273373    542 +   17434   309 18446744073709551615    18446744073709518850    0   0   100 cg:Z:
6867    224 18446744072793273055    224 +   15867   542 18446744073709551615    18446744073709518850    0   0   100 cg:Z:

I use seqwish version 0.7.1 (installed using conda) and for gimbricate, I cloned the current git repository.

ekg / seqwish

terminate called after throwing an instance of 'std::out_of_range' #86