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ekimb / mapquik

Efficient low-divergence mapping of long reads in minimizer space
MIT License
62 stars 4 forks source link

query file format #21

Closed bio-Tao closed 2 months ago

bio-Tao commented 2 months ago

Can the query file format be Unaligned BAM instead of FASTQ/FASTA?

rchikhi commented 2 months ago

hi Tao, adding new input file formats would be nice, but as far as I can tell, development on mapquik has stopped for now. Next on the list should be to fix input FASTA so that it can be multiline :)