Closed anuradhawick closed 4 years ago
Hey there!
runpasha.sh
was an artifact of some recent tests - sorry about that!
The repo does not have precompiled binaries, but you can compile binaries by cloning the repo and compiling with g++:
g++ -O3 -o pasha rand.cpp -fopenmp
and execute with:
./pasha $K $L $THREADS $DECYCPATH $ADDPATH
Feel free to let me know if you have any other questions or close the issue if this helps!
Thanks. I found that you have pre-computed UHS for several K values and L values. Very useful.
Hello,
Really appreciate this implementation and I can see that it works faster than the original java implementation. I am planning to use UHS in some of my research work and wonder if I could use the binaries compiled from this repo. What does
runpasha.sh
do? Does it generate all UHS kmers for all the k values and L values?Thanks.