eldariont svim-asm issues

eldariont / svim-asm

Structural Variant Identification Method using Genome Assemblies

GNU General Public License v3.0

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issues

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How can I get the end position of a translocation?

#27 qizhengyang2017 opened 3 months ago
1
Parameters for long SV detection

#26 MariosGvr opened 1 year ago
0
Sequence "X" not present

#25 RenscoHogers closed 1 year ago
1
How to interpret when Tandem duplications are filtered "not_fully_covered"?

#24 cherryCookies opened 1 year ago
0
Output a contig-size large SV

#23 hangsuUNC opened 1 year ago
0
Option to output insertion/deletion coordinates in query sequence?

#22 cizydorczyk opened 1 year ago
1
identify quite different SVs from two software

#21 aaannaw opened 2 years ago
0
Any option to keep the signature/internal results?

#20 LYC-vio opened 2 years ago
0
QUAL filtering

#19 RasmusBuntzen opened 2 years ago
0
Upper limit of the SV length

#18 MehmetGoktay closed 2 years ago
1
Issues of calling from lra alignments

#17 jiadong324 opened 2 years ago
0
No Duplications output

#16 hhuili opened 2 years ago
0
Multiple records in the same position

#15 zhqduan opened 2 years ago
1
Query genome positions

#14 Murukarthick opened 3 years ago
0
Calling SNPs with svim-asm?

#13 cgroza opened 3 years ago
1
Phased genotype in VCF?

#12 hsiehph closed 3 years ago
2
Co-ordinates of break in query genome

#11 burnsro closed 3 years ago
2
quality and sequence mismatch

#10 masen1991 closed 3 years ago
9
svim-asm on multiple samples

#9 dfguan opened 3 years ago
4
error: CIGAR length too long at position 1

#8 atongsa closed 3 years ago
5
-r2k

#7 atongsa closed 3 years ago
1
Low number of interspersed duplications?

#6 GuillaumeHolley opened 3 years ago
1
OverflowError: value too large to convert to uint32_t

#5 jxlabWzZ closed 3 years ago
10
svim-asm for bacterial genome

#4 rthapa1 closed 3 years ago
1
MAF alignments format

#3 biozzq closed 3 years ago
1
can SVIM-asm used for polyploid assembly

#2 zhen0506 closed 3 years ago
5
using more than 64G RAM

#1 cschin closed 4 years ago
3