eldariont svim-asm issues

eldariont / svim-asm

Structural Variant Identification Method using Genome Assemblies

GNU General Public License v3.0

91 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How can I get the end position of a translocation?

#27 qizhengyang2017 opened 3 weeks ago
0
Parameters for long SV detection

#26 MariosGvr opened 10 months ago
0
Sequence "X" not present

#25 RenscoHogers closed 1 year ago
1
How to interpret when Tandem duplications are filtered "not_fully_covered"?

#24 cherryCookies opened 1 year ago
0
Output a contig-size large SV

#23 hangsuUNC opened 1 year ago
0
Option to output insertion/deletion coordinates in query sequence?

#22 cizydorczyk opened 1 year ago
1
identify quite different SVs from two software

#21 aaannaw opened 1 year ago
0
Any option to keep the signature/internal results?

#20 LYC-vio opened 2 years ago
0
QUAL filtering

#19 RasmusBuntzen opened 2 years ago
0
Upper limit of the SV length

#18 MehmetGoktay closed 2 years ago
1
Issues of calling from lra alignments

#17 jiadong324 opened 2 years ago
0
No Duplications output

#16 hhuili opened 2 years ago
0
Multiple records in the same position

#15 zhqduan opened 2 years ago
1
Query genome positions

#14 Murukarthick opened 2 years ago
0
Calling SNPs with svim-asm?

#13 cgroza opened 2 years ago
1
Phased genotype in VCF?

#12 hsiehph closed 2 years ago
2
Co-ordinates of break in query genome

#11 burnsro closed 2 years ago
2
quality and sequence mismatch

#10 masen1991 closed 3 years ago
9
svim-asm on multiple samples

#9 dfguan opened 3 years ago
4
error: CIGAR length too long at position 1

#8 atongsa closed 3 years ago
5
-r2k

#7 atongsa closed 3 years ago
1
Low number of interspersed duplications?

#6 GuillaumeHolley opened 3 years ago
1
OverflowError: value too large to convert to uint32_t

#5 jxlabWzZ closed 3 years ago
10
svim-asm for bacterial genome

#4 rthapa1 closed 3 years ago
1
MAF alignments format

#3 biozzq closed 3 years ago
1
can SVIM-asm used for polyploid assembly

#2 zhen0506 closed 3 years ago
5
using more than 64G RAM

#1 cschin closed 3 years ago
3