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eldariont / svim

Structural Variant Identification Method using Long Reads
GNU General Public License v3.0
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Multi-sample processing #64

Open YahGao opened 1 year ago

YahGao commented 1 year ago

Hello.

We have generated several PacBio data. As I understand it, svim calls SV for each sample. Can it process multiple samples together? My current idea is to call SV sample by sample and then merge them with SURVIVOR or Jasmine.

Thanks

jamesdalg commented 5 months ago

SVIM does not do that(see limitations section), but if you have found success with a tool, let me know. I tried bcftools and SURVIVOR, but neither seems to work well thusfar.