all.vcf did not contain BND and insertion sequences

[makise58]

Hi.

I'm trying SV calling from nanopore data, however, I have a problem.

svim version 2.0.0

$ svim alignment ~/data input.bam hg38.fa \
--verbose \
--symbolic_alleles \
--insertion_sequences \
--tandem_duplications_as_insertions \
--read_names

Problem 1. trans.bed file contains thousands of BNDs. However, all.vcf file did not contain any BNDs.

Problem 2. Output files did not contain insertion sequences.

How can I get BNDs and insertion sequences in vcf file? Thanks.