0 common SNP between reference ,validation and summary

eldronzhou / SDPR

A fast and robust Bayesian nonparametric method for prediction of complex traits using GWAS summary statistics

GNU General Public License v3.0

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0 common SNP between reference ,validation and summary #9

Closed ooozcl closed 2 years ago

ooozcl commented 2 years ago

hello， when my summary file is SNP,A1,A2,BETA,P，the following error will be reported：terminate called after throwing an instance of 'std::out_of_range' what(): stod。when my summary file is SNP,A1,A2,Z，show 0 common SNP between reference ,validation and summary，Is this because there are no common SNPs in my files?or some other reason?

eldronzhou commented 2 years ago

Hi,

Thank you for using SDPR. Is your summary file publicly available or could you send it to me (geyu.zhou@yale.edu) so that I can investigate the issue?

ooozcl commented 2 years ago

Sorry to bother you, it’s my problem, the summary file format SNP, A1, A2, Z can run.