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elifesciences / elife-pubmed-feed

code to support uploading feeds to pubmed for POA articles and VOR articles
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Group authors #7

Closed Melissa37 closed 9 years ago

Melissa37 commented 10 years ago

We've not yet had group authors, but they are coming and it is important that this information goes to PubMed. The kitchen sink xml has examples of group authors and thus what would be required to extract from the xml for the VoR deposit. We'd have to mess about with the live EJP system to get samples into PoA SQL queries, so best to address this first time we have some in the live system for PoA

Melissa37 commented 10 years ago

We will have an article with group authors in 2 months, so this is no longer an enhancement but a requirement! Am testing the parent VOR xml with HW now. Need to provide indication of where it will be stored in the EJP CSV files for POA?

M

Melissa37 commented 9 years ago

Group authors are collected in EJP and EJP indicated the group author order in the list. We need to work out how to retrieve both the author name and the order in the list from the database, add to SQL query and CSV file output, and code into the PoA workflow.

This will also be a requirement for CrossRef and PubMed deposits, so needs to be worked on soon as we have some coming through.

For the initial PubMed deposit for PoA, indicating members of the group authorship will not be necessary at launch, but should be coded in for VoR.

Melissa37 commented 9 years ago

Also, differentiate between on behalf of and just the group author being an author

Melissa37 commented 9 years ago

EJP: Group authors are stored as an XML in the Notes table with a note_type_ind of 487. The sequence is stored in a element inside the XML. The other element indicates the literal order on the submission form.

James to add to the SQL export

Melissa37 commented 9 years ago

http://www.ncbi.nlm.nih.gov/books/NBK3828/#publisherhelp.Can_Collective_Autho

gnott commented 9 years ago

Group authors feature was added to PubMed XML generation when reading a VoR article XML with this commit

https://github.com/elifesciences/elife-poa-xml-generation/commit/702c66205f009c3243f7834457a3daa05a09d25d

The fix for this issue made it so PoA XML included group author values

https://github.com/elifesciences/elife-poa-xml-generation/issues/161

These should solve PubMed XML to include group authors for both PoA and VoR.