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elifesciences / enhanced-preprints-import

Enhanced Preprints import system
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MSID: 92877 Version: 1 DOI: 2023.10.08.561387 #2177

Open nlisgo opened 9 months ago

nlisgo commented 9 months ago

"msas": "Neuroscience" "msid": "92877" "preprintDoi": "10.1101/2023.10.08.561387" "Reviewed Preprint posted": "2023-12-29" "Sent for peer review": "2023-10-08" "Posted to bioRxiv": "2023-10-10" (link: "Go to bioRxiv": "https://www.biorxiv.org/content/10.1101/2023.10.08.561387v1/")

[PLACE PDF URL HERE WHEN AVAILABLE] See step 7

Step 1. Inform bioRxiv

Who can help: @QueenKraken, @nlisgo, @scottaubrey

Step 2. Create preview of manuscript

Who can help: @fred-atherden, @nlisgo, @scottaubrey

Pull request: [PLACE LINK TO PULL REQUEST HERE]

Detailed instructions: https://github.com/elifesciences/enhanced-preprints-data#add-a-manuscript

Step 3: Awaiting public reviews and QC

Who can help: Production team

Who can help: Editorial team

Example ``` "msas": "Genetics and Genomics", "Neuroscience" "msid": "84628" "version": "1" "preprintDoi": "10.1101/2022.10.28.514241" "articleType": "Reviewed Preprint" "status": "Published from the original preprint after peer review and assessment by eLife." "Reviewed Preprint posted": "2023-01-02" "Sent for peer review": "2022-10-28" "Posted to bioRxiv": "2022-11-21" (link: "Go to bioRxiv": "https://www.biorxiv.org/content/10.1101/2022.10.28.514241v1") Editors: Reviewing Editor Michael B Eisen University of California, Berkeley, United States Senior Editor Michael B Eisen University of California, Berkeley, United States ```

Step 4: Modify manuscripts.json (no PDF)

Pull request: [PLACE LINK TO PULL REQUEST HERE] #enhanced-preprint comment thread: [PLACE LINK TO COMMENT HERE]

Instructions to modify manuscripts.json - Visit: https://github.com/elifesciences/enhanced-preprints-client/actions/workflows/publish-manuscript.yaml - Click: Run workflow - Complete the form and click "Run workflow" - A successful run should result in a new pull request at https://github.com/elifesciences/enhanced-preprints-client/pulls - Open the pull request and click the "Ready for review" button to trigger tests - Once the tests pass and you are happy with the changes the PR can be merged Example pull request: https://github.com/elifesciences/enhanced-preprints-client/pull/334/files Once the pull request is merged in it should be available a few minutes later.

Request that a doi

Post the following in #enhanced-preprint:

@Fred can you register a doi for https://elifesciences.org/reviewed-preprints/92877

Step 5: Awaiting search reindex

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Additional info If needed, the jenkins pipeline to reindex search can be triggered sooner. https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 6: Published! Request PDF generation

#enhanced-preprint comment thread: [PLACE LINK TO COMMENT HERE]

Post the following to the #enhanced-preprint on slack:

@Ryan Dix-Peek please can you generate a PDF for https://elifesciences.org/reviewed-preprints/92877

Step 7: Introduce PDF to data folder and git repo

Detailed instructions: https://github.com/elifesciences/enhanced-preprints-data#add-a-pdf

Step 8: Add PDF url to manuscripts.json

[PLACE LINK TO PULL REQUEST HERE]

Instructions to add PDF url to manuscripts.json - Visit: https://github.com/elifesciences/enhanced-preprints-client/actions/workflows/add-pdf-url-to-manuscript.yaml - Click: Run workflow - Complete the form and click "Run workflow" - A successful run should result in a new pull request at https://github.com/elifesciences/enhanced-preprints-client/pulls - Open the pull request and click the "Ready for review" button to trigger tests - Once the tests pass and you are happy with the changes the PR can be merged Example pull request: https://github.com/elifesciences/enhanced-preprints-client/pull/397/files Once the pull request is merged in it should be available a few minutes later.

Step 9: Done!

rkcook312 commented 9 months ago

no affiliations for Lauren Levine and Michael Anne Gratton

fred-atherden commented 9 months ago

Well spotted @rkcook312. Are you OK to reach out to the corresponding author(s) to ask what they should be (i.e. that we're preparing the reviewed preprint for publication and note that Lauren Levine and Michael Anne Gratton are missing affiliations - could they please confirm what they should be or that it is correct that they lack any affiliation [e.g. are independent researchers])?

rkcook312 commented 9 months ago

Thanks @fred-atherden, no problem, email sent.

fred-atherden commented 8 months ago

@rkcook312 if we've not heard from the authors do you think it's worth chasing?

rkcook312 commented 8 months ago

@fred-atherden chaser email has now gone out to corresponding author, thanks!

rkcook312 commented 8 months ago

@fred-atherden received the following response:

Dear Rebecca,

1) I want to submit a revised version this weekend. Kindly allow me to do so.

2) Lauren Levine and Michael Anne Gratton ------ Michael Anne Gratton= Boystown National Research Hospital, 555 N. 30th St. Omaha NE 68131 USA

Lauren Levine = Washington University, Program in Audiology and Communication Sciences 825 S Taylor Ave, St. Louis, MO 63110 USA.

Thank you so much. Sorry for the delay. I am travelling. Sincerely yours, Ebenezer

fred-atherden commented 8 months ago

Thanks Rebecca. I've uploaded a package with the additional affiliations here s3://prod-elife-epp-meca/92877-v1-meca.zip. The DocMap will take ~1 hour to update, then EPP should update shortly after, and we can check the preview

fred-atherden commented 8 months ago

Looks like we're good to go:

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